I recently upgraded the firmware on a 90D firewall and when users attempt to log in to the VPN through FortiClient it is no longer requesting their FortiToken for 2FA. I've gone through all the settings and everything appears to be correct. I've reached out to support with no good answer other than to try out the new FortiClient (6.0.4) which they are already doing. I've attempted to unassign and reassign the FortiTokens to the users, but that doesn't fix the issue. The users are LDAP users. This is an SSL-VPN.
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