After the endpoint is added to the EMS server, it will show up in one of the workgroups. Endpoints/Workgroups/[Group Name] or under All Endpoints. You will assign an Endpoint Policy and Endpoint Profile to the device, and can manage profiles (Malware, Sandbox, Web Filter, etc.). The device will receive updates once it is assigned to an Endpoint Profile.
To what kind of config are you referring?
Opinions expressed are my own and may not represent the official opinion of my employer.