This article describes the certificate error received [used], when a user tries to delete it.
FortiManager and FortiAnalyzer.
In FortiGate, it is possible to see the reference where the certificates is being used, while in FortiManager and FortiAnalyzer there is no way to find like this.
The only way is to find manually where the certificate is being used.
It is possible to search it on GUI or CLI,
After replaced it with new certificate, it will able to delete it.
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