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HeorhiiY
New Member
March 30, 2026
Question

Low throughput over IPsec running on top of VXLAN over IPsec (FortiGate 7.6.6)

Hi all,

I’m looking for advice or similar experience with a layered VPN design on FortiGate.

Topology

Diag.drawio.png

 

 

  1. The core transport network is built on FortiGate devices using VXLAN over IPsec across the Internet (site-to-site).
  2. Inside the VXLAN, there is a single L2 broadcast domain, and over this network I establish a second (service) IPsec tunnel between two FortiGate devices (for a specific customer).
  3. Behind the service (customer) FortiGates:
    • On one side: a server
    • On the other side: a client PC 

Problem:

Throughput between the client PC and the server is very low (~9 Mbps).

Testing is done using iperf.

What I verified

  • If I connect the customer FortiGates directly (without VXLAN) or over the Internet with a single IPsec tunnel, I get around 500 Mbps.
  • This seems to rule out:
    • FortiGate performance limits
    • PC/server performance
    • Internet bandwidth issues

Hypothesis

I suspect the issue is related to MTU / MSS / fragmentation due to multiple encapsulation layers:

  • inner IPsec
  • VXLAN
  • outer IPsec

However, I’m not sure:

  • where exactly MTU/MSS should be adjusted (core vs edge, physical vs tunnel interfaces)
  • what values are typically used in such designs

Questions

  • Has anyone implemented a similar IPsec over VXLAN over IPsec design on FortiGate?
  • Where is the correct place to tune MTU / TCP MSS in this kind of topology?
  • Are there recommended values or best practices for FortiGate in this scenario?
  • Any specific debugging steps to confirm MTU/fragmentation issues?

Any insights or real-world experience would be highly appreciated.

Thanks!

FortiGate 

#IPSec

#VXLan

1 reply

Jean-Philippe_P
Staff & Editor
Staff & Editor
April 2, 2026

Hello HeorhiiY, 

 

Thank you for using the Community Forum. I will seek to get you an answer or help. We will reply to this thread with an update as soon as possible. 

Jean-Philippe - Fortinet Community Team
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